84 lines
2.4 KiB
C++
84 lines
2.4 KiB
C++
#include <eisgenerator/translators.h>
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#include <eisgenerator/eistype.h>
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#include <iostream>
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#include <string>
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#include <vector>
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#include <filesystem>
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#include "csvBackend.h"
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#include "tokenize.h"
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#include "common.h"
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void trimBrackets(std::string& str)
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{
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if(str[0] == '[')
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str.erase(str.begin());
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if(str.back() == ']')
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str.pop_back();
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}
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std::vector<eis::DataPoint> parseEisDataFromMadapArrays(std::string& freqArray, std::string& realArray, std::string& imaginaryArray)
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{
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assert(realArray.size() > 2);
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assert(imaginaryArray.size() > 2);
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trimBrackets(realArray);
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trimBrackets(imaginaryArray);
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trimBrackets(freqArray);
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std::vector<std::string> freqTokens = tokenize(freqArray, ',');
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std::vector<std::string> realTokens = tokenize(realArray, ',');
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std::vector<std::string> imaginaryTokens = tokenize(imaginaryArray, ',');
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assert(realTokens.size() == freqTokens.size() && realTokens.size() == imaginaryTokens.size());
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std::vector<eis::DataPoint> data;
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data.reserve(freqTokens.size());
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for(size_t i = 0; i < freqTokens.size(); ++i)
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data.push_back(eis::DataPoint(std::complex<fvalue>(std::stod(realTokens[i]), std::stod(imaginaryTokens[i])), 2*M_PI*std::stod(freqTokens[i])));
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std::sort(data.begin(), data.end(), [](const eis::DataPoint& a, const eis::DataPoint& b){return a.omega < b.omega;});
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return data;
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}
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int main(int argc, char** argv)
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{
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if(argc < 2)
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{
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std::cerr<<"Usage: "<<(argc > 0 ? argv[0] : "NULL")<<" [FILE] [OUTDIR]\n";
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return 1;
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}
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io::CSVReader<7, io::trim_chars<' ', '\t'>, io::no_quote_escape<';'>> csvFile(argv[1]);
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csvFile.read_header(io::ignore_extra_column, "experimentID", "temperature", "frequency",
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"real_impedance", "imaginary_impedance", "EIS_fittedParameters", "EIS_circuit");
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if(!csvFile.next_line())
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return 1;
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if(!csvFile.next_line())
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return 1;
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std::string frequencyArray;
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std::string realArray;
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std::string imaginaryArray;
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std::string paramArray;
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std::string circutString;
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std::string idStr;
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double temperature;
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std::filesystem::path outDir("./out");
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if(argc == 3)
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outDir = argv[2];
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if(!checkDir(outDir))
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return 1;
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while(csvFile.read_row(idStr, temperature, frequencyArray, realArray, imaginaryArray, paramArray, circutString))
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{
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ModelData data;
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data.modelStr = eis::madapToEis(circutString, paramArray);
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data.id = idStr;
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data.data = parseEisDataFromMadapArrays(frequencyArray, realArray, imaginaryArray);
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saveData("madap", data, outDir, argv[1]);
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}
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}
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